## Do not hesitate to contact me if you do not have direct access to these publications, I will happily send you a pdf. ##
Peer-reviewed publications:
20- Williams JW, Spanbauer T, Blois J, Capo E, Goring S, Heintzman PD, Monchamp M-E, Parducci L, Von Eggers JM, Alsos IG, Bowler C, Coolen MJL, Cullen N, Crump S, Epp LS, Fernandez-Guerra A, Grimm E, Herzschuh U, Mereghetti A, Mayer R, Nota K, Pedersen MW, Pérez V, Shapiro B, Stoof-Leichsenring KR, Wood J. (2023) Strengthening global-change science by integrating aeDNA with paleoecoinformatics. Trends in Ecology and Evolution 3157 No. DOI: 10.1016/j.tree.2023.04.016
19- Gros M & Zilkey D (equal contribution), Griffiths KT, Pham J, MacKeigan# PW, Taranu ZE, Aulard C, Baud A, Garner RE, Ghanbari H, Lachapelle# M, Monchamp M-E, Paquette C, Antoniades D, Francus P, Smol JP, Gregory-Eaves I. (2023) The paleolimnological perspective on environmental change in the Canadian Boreal zone: Synthesizing temporal trends from lake sediment archives to inform future sustainability. Environmental Reviews doi: 10.1139/er-2023-0006
18- Monchamp M-E, Taranu ZE, Garner RE, Rehill T, Morissette O, Iversen LL, Fugère V, Littlefair JE, Barbosa da Costa N, Desforges JE, Sanchez Schacht JR, Derry AM, Cooke SJ, Barrett RDH, Walsh DA, Ragoussis J, Albert M, Cristescu ME and Gregory-Eaves I. (2023) Prioritizing taxa for genetic reference database development to advance inland water conservation. Biological Conservation doi: 10.1016/j.biocon.2023.109963.
17- Nwosu EC, Brauer A, Monchamp M-E, Pinkerneil S, Bartholomäus A, Poloni J, Theuerkauf M, Schmidt J-P, Stoof-Leichsenring K, Wietelmann T, Kaiser J, Wagner D, and Liebner S. (2023) Early human impact on lake cyanobacteria revealed by a Holocene record of sedimentary ancient DNA. Communications Biology doi: 10.1038/s42003-023-04430-z
Press release: GFZ Potsdam
16- Barouillet C, Monchamp M-E, Bertilsson S, Brasell K, Domaizon I, Epp LS, Ibrahim A, Mejbel H, Nwosu EC, Pearman JK, Picard M, Thomson-Laing G, Tsugeki N, Von Eggers J, Gregory-Eaves I, Pick FR, Wood SA, and Capo E. Investigating the effects of anthropogenic stressors on lake biota using sedimentary DNA. Freshwater Biology doi: 10.1111/fwb.14027
15- Monchamp M-E., Walsh D.A., Garner R.E., Kraemer S.A., Beisner B.E., Cristescu M.E., Gregory-Eaves I. (2022) Comparative analysis of zooplankton distribution freshwaters: What can we gain from metagenomic an analysis? Environmental DNA October 2021. doi: 10.1002/edn3.335
14- Von Eggers J, Monchamp M-E, Capo E, Giguet-Covex C, Spanbauer T, Heintzman PD (2022) Inventory of ancient environmental DNA from sedimentary archives: locations, methods, and target taxa. (Dataset) July. doi: 10.5281/ZENODO.6847522.
13- Huo S, Zhang H, Monchamp M-E, Wang R, Weng N, Zhang J, Zhang H, Wu F. (2022) Century-Long Homogenization of Algal Communities Is Accelerated by Nutrient Enrichment and Climate Warming in Lakes and Reservoirs of the North Temperate Zone Environmental Science & Technology doi: 10.1021/acs.est.1c06958
12- MacKeigan PW., Garner R., Monchamp M-E., Kraemer SA., Onana V., Walsh DA., Pick FR., Beisner BE., Abgeti M., Gregory-Eaves I. (2022) Comparing morphological and metabarcoding analyses for cyanobacteria across 100s of lakes: What's the difference amongst datasets? Harmful Algae 113 (March 2022) 102187 doi: 10.1016/j.hal.2022.102187
11- Monchamp* M-E. & Capo* E., Coolen MJL., Domaizon I., Armbrecht L., Bertilsson S. (2022) Next generation microbial paleoecology: using DNA preserved in sediments to its full potential. Environmental Microbiology 24:5 doi: 10.1111/1462-2920.15913 * co- first authors with equal contributions
10- Monchamp M-E., Bruel R., Frossard V., McGowan S., Lavrieux M., Muschick M., Perga M-E., Dubois N. (2021) Paleoecological evidence for a multi-trophic regime shift in a perialpine lake (Lake Joux, Switzerland). Anthropocene, ISSN: 2213-3054, Vol: 35, Page:100301 doi: 10.1016/j.ancene.2021.100301
9- Rodriguez-Ezpeleta N., Morissette O., Bean CW., Manu S., Banerjee P., Lacoursière-Roussel A., Beng K.C., Alter E., Roger F., Holman L.E., Stewart K.A., Monaghan M.T., Mauvisseau Q., Mirimin L., Wangensteen O.S., Antognazza C.M., Helyar S.J., de Boer H., Monchamp M-E., Nijland R., Abbott C.L., Doi H., Barnes M.A., Leray M., Hablützel P.I., Deiner K. (2021) Trade-offs between reducing complex terminology and producing accurate interpretations from environmental DNA: Comment on “Environmental DNA: What’s behind the term?” by Pawlowski et al. 2020. Molecular Ecology 2021;00:1–5, doi: 10.1111/mec.15942
8- Capo E, Giguet-Covex C, Rouillard A, Nota K, Heintzman PD, Vuillemin A, Ariztegui D, Arnaud F, Belle S, Bertilsson S, Bigler C, Bindler R, Brown AG, Clarke CL, Crump SE, Debroas D, Englund G, Ficetola GF, Garner RE, Gauthier J, Gregory-Eaves I, Heinecke L, Herzschuh U, Ibrahim A, Kisand V, Kjær KH, Lammers Y, Littlefair J, Messager E, Monchamp M-E, Olajos F, Orsi W, Pedersen MW, Rijal DP, Rydberg J, Spanbauer T, Stoof-Leichsenring KR, Taberlet P, Talas L, Thomas C, Walsh DA, Wang Y, Willerslev E, van Woerkom A, Zimmermann HH, Coolen MJL, Epp LS, Domaizon I, Alsos IG, Parducci L. (2021) Lake sedimentary DNA research on past terrestrial and aquatic biodiversity: Overview and recommendations. Quaternary. 2021; 4(1):6. Special Issue Lake Sediments: An Invaluable Archive of Earth Critical Zone Trajectories. doi: 10.3390/quat4010006
7- Turko P. Tellenbach C., Dziuba M.K., Monchamp M-E., Wolinska J., Spaak P. (2019) Assessment of a new method for genotyping formaldehyde-fixed Daphnia and a comparison with current methods of population reconstruction. Hydrobiologia, doi: 10.1007/s10750-019-04015-0
6- Monchamp M-E., Spaak P., Pomati F. (2019) High dispersal levels and lake warming are emergent drivers of cyanobacterial community assembly in peri-Alpine lakes. Scientific Reports, doi: 10.1038/s41598-019-43814-2
read online
5- Monchamp M-E., Pomati F., Spaak P. (2018) Long term diversity and distribution of nonphotosynthetic cyanobacteria in peri-Alpine lakes. Frontiers in Microbiology, doi: 10.3389/fmicb.2018.03344
4- Monchamp M-E., Spaak P., Dubois N., Domaizon I., Bouffard D., Pomati F. (2017) Homogenization of lake cyanobacterial communities over a century of climate change and eutrophication. Nature Ecology & Evolution
doi: 10.1038/s41559-017-0407-0
read online
- Press release: www.admin.ch/gov/en/start/documentation/media-releases.msg-id-69191.html
- Featured on: Swiss national news 05.01.2018
3- Monchamp M-E., Enache I., Turko P., Pomati F., Rîșnoveanu G., Spaak P. (2017) Sedimentary and egg-bank DNA from 3 European lakes reveal concurrent changes in the composition and diversity of cyanobacterial and Daphnia communities. Hydrobiologia, doi: 10.1007/s10750-017-3247-7
2- Monchamp, M-E., Walser, J-C., Pomati, F., Spaak, P. (2016) Sedimentary DNA reveals cyanobacterial community diversity over 200 years in two perialpine lakes. Applied and Environmental Microbiology, 82 (21), 6472-6482. doi: 10.1128/AEM.02174-16
- Featured on:
Eawag News-Letter 15.12.2016
Tages-Anzeiger 16.01.2017
1- Monchamp M-E., Pick F.R., Beisner B.E., and Maranger R. (2014) Nitrogen forms influence microcystin concentration and composition via changes in cyanobacterial community structure. PLos One 9(1):e85573.
doi: 10.1371/journal.pone.0085573
Non peer-reviewed publications:
- Monchamp M-E, Armbrecht L, Capo E, Coolen MJL, Cordier T, Domaizon I, Epp LS, Giguet-Covex C, Gregory-Eaves I, Herzschuh U, Parducci L, Stoof-Leichsenring KR and Williams JW (2021) PaleoEcoGen: Unlocking the power of ancient environmental DNA to understand past ecological trends. PAGES Magasine, 29(2) 102. doi: doi.org/10.22498/pages.29.2.102
Popular science contributions:
Monchamp M-E, 2022. "La génomique à la rescousse des lacs" Blog Post & Podcast episode
Submitted manuscripts:
- Monchamp M-E & Pick FR. Chapter 5: Cyanobacteria DNA From Lake Sediments. In Tracking Environmental Change Using Lake Sediments: Volume 6 - Sedimentary DNA. Capo, Barrouillet & Smol (Editors) (Accepted).
- Gregory-Eaves I, Monchamp M-E, Taranu ZE. (2023) Tracking aquatic animals with sediment DNA records. Chapter 9 in Tracking Environmental Change Using Lake Sediments: Volume 6 – Sedimentary DNA. Capo, Barouillet & Smol Eds. doi: 10.22541/essoar.167287040.04332426/v1 Authorea preprint
- Taranu ZE, Monchamp M-E, Gregory-Eaves I. Chapter 10: Considering Organisms In An Interactive Web With Sediment DNA Records. in Tracking Environmental Change Using Lake Sediments: Volume 6 – Sedimentary DNA. Capo, Barouillet & Smol (Editors) (In revision).
- Huston G, Lopez MLD, Helbing CC, Kinnison M, Saros J, Cheng# Y, King L, Duxbury L, Gregory-Eaves I, Monchamp M-E, Wood S, Thomson-Laing G, Picard M, Armbrecht L, Doi H, Ficetola FG, Myler E, Hanner R, Kurte L, Von Eggers J, Brahney J, Sakata MK, Kuwae M, Parent G, Capo E. Detection of fish sedimentary DNA (sedDNA) in aquatic systems: Methodological uncertainties and future directions (submitted to Environmental DNA)
Manuscripts in preparation:
- Monchamp M-E, Taranu ZE, and the PaleoEcoGen Working Group. Evaluating critical transitions in paleoenvironments using a model-based approach on ancient environmental DNA time-series.